Seiji Wada, Yuki Yamamoto, Tomoka Saito, Masahiko Hibi, Mitsumasa Koyanagi, Akihisa Terakita
Neural circuits for decision-making based on pineal photoreception in zebrafish.
Proc Natl Acad Sci U S A DOI: 10.1073/pnas.2520290123 in press (2026)
[Pubmed]
Zi Chao Ngiam, Kyosuke Wada, Jun Hatakeyama, Yuki Y Yamauchi, Takuya Kaneko, Pauline Rouillard, Haruka Sato, Masahiko Hibi, Ikuo K Suzuki, Carina Hanashima, Chiaki Ohtaka-Maruyama, Takuma Kumamoto
Expanded iOn switch toolkit enables flexible clonal labeling and dynamic imaging in model and non-model animals.
Commun Biol. DOI: 10.1038/s42003-026-09907-1 in press (2026)
[Pubmed]
Makoto Goda, Asuka Miyagi, Keisuke Sugiwaka, Masakatsu Watanabe, Manabu Bessho-Uehara, Masahiko Hibi, Atsushi Toyoda, Rieko Tanaka, Kawilarang W A Masengi, Kazunori Yamahira, Satoshi Ansai, Hisashi Hashimoto
A Simple Method for RNA-Seq of Manually Isolated Chromatophores in Oryzias Fishes.
Dev Growth Differ. DOI: 10.1111/dgd.70044 in press (2026)
[Pubmed]
Hayato M Yamanouchi, Ryosuke F Takeuchi, Naoya Chiba, Koichi Hashimoto, Takashi Shimizu, Fumitaka Osakada, Ryoya Tanaka, Azusa Kamikouchi
YORU: Animal behavior detection with object-based approach for real-time closed-loop feedback.
Sci Adv. DOI: 10.1126/sciadv.adw2109 in press (2026)
[Pubmed]
2025
Jui Chun Wang, Takashi Shimizu, Masahiko Hibi
Transforming growth factor-β-mediated regulation of atoh1-expressing neural progenitors is involved in the generation of cerebellar granule cells in larval and adult zebrafish.
Dev Growth Differ. DOI: 10.1111/dgd.70002 in press (2025)
[Pubmed]
Franziska Auer, Katherine Nardone, Koji Matsuda, Masahiko Hibi, David Schoppik
Cerebellar Purkinje cells control posture in larval zebrafish (Danio rerio).
Elife. DOI: 10.7554/eLife.97614 in press (2025)
[Pubmed]
Tomomi Nishie, Tomoki Taya, Shunichi Omori, Kenya Ueno, Yoshinori Okamoto, Shogo Higaki, Marina Oka, Yachiyo Mitsuishi, Taiga Tanaka, Mana Nakamoto, Hideaki Kawahara, Natsuki Teraguchi, Tomoyuki Kotaka, Misaki Sawabe, Miu Takahashi, Shoko Kitaike, Minori Wada, Keiko Iida, Akihiro Yamashita, Hideto Jinno, Atsuhiko Ichimura, Ikuo Tooyama, Noriyoshi Sakai, Masahiko Hibi, Akira Hirasawa, Tatsuyuki Takada
Effects of Bisphenol A and Retinoic Acid Exposure on Neuron and Brain Formation: A Study in Human Induced Pluripotent Stem Cells and Zebrafish Embryos.
Environ Health Perspects. DOI: 10.1289/EHP15574 in press (2025)
[Pubmed]
2024
Takuya Kaneko, Jonathan Boulanger-Weill, Adam J Isabella, Cecilia B Moens
Position-independent functional refinement within the vagus motor topographic map.
Cell reports. DOI: 10.1016/j.celrep.2024.114740 in press (2024)
[Pubmed]
Takuya Kaneko, Ruonan Li, Qun He, Limin Yang, Bing Ye
Trans-synaptic BMP signaling regulates fine-scale topography between adjacent sensory neurons.
eNeuro.11(8)ENEURO.0322-24 DOI: 10.1523/ENEURO.0322-24.2024 in press (2024)
[Pubmed]
Shiori Hosaka, Miu Hosokawa, Masahiko Hibi, Takashi Shimizu
The Zebrafish Cerebellar Neural Circuits Are Involved in Orienting Behavior.
Development. DOI: 10.1523/ENEURO.0141-24.2024 in press (2024)
[Pubmed]
Tsubasa Itoh, Mari Uehara, Shinnosuke Yura, Jui Chun Wang, Yukimi Fujii, Akiko Nakanishi, Takashi Shimizu, Masahiko Hibi
Foxp and Skor family proteins control differentiation of Purkinje cells from Ptf1a- and Neurog1-expressing progenitors in zebrafish.
eNeuro. DOI: 10.1242/dev.202546 in press (2024)
[Pubmed]
2023
Motohiro Miyadai, Hiroyuki Takada, Akiko Shiraishi, Tetsuaki Kimura, Ikuko Watakabe, Hikaru Kobayashi, Yusuke Nagao, Kiyoshi Naruse, Shin-ichi Higashijima, Takashi Shimizu, Robert N. Kelsh, Masahiko Hibi, Hisashi Hashimoto.
A gene regulatory network combining Pax3/7, Sox10 and Mitf generates diverse pigment cell types in medaka and zebrafish.
Development.150(19): dev202114.
[Pubmed]
Hanako Hagio, Wataru Koyama, Shiori Hosaka, Aysenur Deniz Song, Janchiv Narantsatsral, Koji Matsuda, Takashi Shimizu, Shoko Hososhima, Satoshi P Tsunoda, Hideki Kandori, Masahiko Hibi.
Optogenetic manipulation of neuronal and cardiomyocyte functions in zebrafish using microbial rhodopsins and adenylyl cyclases.
elife. DOI: 10.7554/eLife.83975
[Pubmed]
Hanako Hagio, Wataru Koyama, Shiori Hosaka, Aysenur Deniz Song, Janchiv Narantsatsral, Koji Matsuda, Tomohiro Sugihara, Takashi Shimizu, Mitsumasa Koyanagi, Akihisa Terakita, Masahiko Hibi.
Optogenetic manipulation of Gq- and Gi/o-coupled receptor signaling in neurons and heart muscle cells.
elife. DOI: 10.7554/eLife.83974
[Pubmed]
2022
Ikenaga T, Shimomai R, Hagio H, Kimura S, Matsumoto K, Kato DI, Uesugi K, Takeuchi A, Yamamoto N, Hibi M
Morphological analysis of the cerebellum and its efferent system in a basal actinopterygian fish, Polypterus senegalus. J Comp Neurol. DOI:10.1002/cne.25271 (2021). [Pubmed]
2021
Wu D, Arakawa H, Fujita A, Hashimoto H, Hibi M, Naruse K, Kamei Y, Sato C, Kitajima K.
A point-mutation in the C-domain of CMP-sialic acid synthetase leads to lethality of medaka due to protein insolubility. Sci Rep.11(1):23211. DOI:10.1038/s41598-021-01715-3. (2021). [Pubmed]
Kim J, Hyun M, Hibi M, You YJ.
Maintenance of quiescent oocytes by noradrenergic signals. Nat Commun.12(1):6925. DOI:10.1038/s41467-021-26945-x. (2021). [Pubmed]
Tsunogai Y, Miyadai M, Nagao Y, Sugiwaka K, Kelsh RN, Hibi M, Hashimoto H.
Contribution of sox9b to pigment cell formation in medaka fish. Dev Growth Differ. DOI:10.1111/dgd.12760 (2021). [Pubmed]
Tsubasa Itoh, Shinsuke Inoue, Xiaoding Sun, Ryo Kusuda, Masahiko Hibi, Takashi Shimizu.
Cfdp1 controls the cell cycle and neural differentiation in the zebrafish cerebellum and retina. Developmental Dynamics. DOI:10.1002/dvdy.371 (2021). [Pubmed]
Wataru Koyama, Ryo Hosomi, Koji Matsuda, Koichi Kawakami, Masahiko Hibi, Takashi Shimizu.
Involvement of Cerebellar Neural Circuits in Active Avoidance Conditioning in Zebrafish. eNeuro.8(3) (2021). [Pubmed]
Watanabe Y, Oguri R, Suzuki R, Meng Q, Ishikawa Y, Tatsukawa H, Hashimoto H, Hitomi K.
Thrombin-deficient mutant of medaka, a model fish, displays serious retardation in blood coagulation. Biosci Biotechnol Biochem.85(4):824-833 doi: 10.1093/bbb/zbaa098 (2021). [Pubmed]
2020
Itoh T, Takeuchi M, Sakagami, M, Asakawa K, Sumiyama K, Kawakami K, Shimizu T, Hibi M.
Gsx2 is required for specification of neurons in the inferior olivary nuclei from Ptf1a-expressing neural progenitors in zebrafish. Development.147, dev190603. doi: 10.1242/dev.190603. (2020). [Pubmed]
Hamied A, Alnedawy Q, Correia A, Hacker C, Ramsdale M, Hashimoto H, Kudoh T.
Identification and Characterization of Highly Fluorescent Pigment Cells in Embryos of the Arabian Killifish (Aphanius Dispar). iScience. 23:101674 (2020). [Pubmed]
Watanabe Y, Okuya K, Takada Y, Kinoshita M, Yokoi S, Chisada S, Kamei Y, Tatsukawa H, Yamamoto N, Abe H, Hashimoto H, Hitomi K.
Gene disruption of medaka (Oryzias latipes) orthologue for mammalian tissue-type transglutaminase (TG2) causes movement retardation. J Biochem. 168, 213-222 (2020). [Pubmed]
Chang W, Pedroni A, Hohendorf V, Giacomello S, Hibi M, Koster RW, Ampatzis K.
Functionally distinct Purkinje cell types show temporal precision in encoding locomotion. Proc Natl Acad Sci U S A. 117, 17330-17337 (2020). [Pubmed]
Sugiura M, Tsunoda SP, Hibi M, Kandori H.
Molecular Properties of New Enzyme Rhodopsins With Phosphodiesterase Activity. ACS Omega. 5, 10602-10609 (2020). [Pubmed]
2019
Verreet T, Weaver CJ, Hino H, Hibi M, Poulain FE.
Syntaphilin-mediated docking of mitochondria at the growth cone is dispensable for axon elongation in vivo. eNeuro. 6, ENEURO.0026-19 (2019). [Pubmed]
Nimura T, Itoh T, Hanako H, Hayashi T, V Di Donato, Takeuchi M, Itoh T, Inoguchi F, Sato Y, Yamamoto N, Katsuyama Y, F D Bene, Shimizu T, Hibi M.
Role of Reelin in cell positioning in the cerebellum and the cerebellum-like structure in zebrafish. Dev Biol. 455, 393-408 (2019). [Pubmed]
Dohaku R, Yamaguchi M, Yamamoto N, Shimizu T, Osakada F and Hibi M.
Tracing of afferent connections in the zebrafish cerebellum using recombinant rabies virus. Front Neural Circuits. 13, 30 (2019). [Pubmed]
2018
Hara Y, Takeuchi M, Kageyama Y, Tatsumi K, Hibi M, Kiyonari H, Kuraku S.
Madagascar ground gecko genome analysis characterizes asymmetric fates of duplicated genes. BMC Biol. 16, 40 (2018). [Pubmed]
Nagao Y, Takada H, Miyadai M, Adachi T, Seki R, Kamei Y, Hara I, Taniguchi Y, Naruse K, Hibi M, Kelsh RN, Hashimoto H.
Distinct interactions of Sox5 and Sox10 in fate specification of pigment cells in medaka and zebrafish. PLoS Genet. 14, e1007260 (2018). [Pubmed]
Kidwell CU, Su CY, Hibi M, Moens CB.
Multiple zebrafish atoh1 genes specify a diversity of neuronal types in the zebrafish cerebellum. Dev Biol. 438, 96-107 (2018) [Pubmed]
Hino H, Nakanishi A, Seki R, Aoki T, Yamaha E, Kawahara A, Shimizu T, Hibi M.
Roles of maternal wnt8a transcripts in axis formation in zebrafish. Dev Biol. 434, 96-107 (2018). [Pubmed]
2017
Matsuda, K., Yoshida, M., Kawakami, K., Hibi, M., and Shimizu, T.
Granule cells control recovery from classical conditioned fear responses in the zebrafish cerebellum. Sci Rep 7, 11865 (2017) [Pubmed]
Takeuchi, M., Inoue, C., Goshima, A., Nagao, Y., Shimizu, K., Miyamoto, H., Shimizu, T., Hashimoto, H., Yonemura, S., Kawahara, A., Hirata, Y., Yoshida, M., and Hibi, M.
Medaka and zebrafish contactin1 mutants as a model for understanding neural circuits for motor coordination. Genes Cells 22, 723-741 (2017) [Pubmed]
Horimizu, R., Ogawa, R., Watanabe, Y., Tatsukawa, H., Kinoshita, M., Hashimoto, H., and Hitomi, K.
Biochemical characterization of a medaka (Oryzias latipes) orthologue for mammalian Factor XIII and establishment of a gene-edited mutant. FEBS J. 284, 2843-2855 (2017) [Pubmed]
Yun, U.J., Sung, J.Y., Park, S.Y., Ye, S.K., Shim, J., Lee, J.S., Hibi, M., Bae, Y.K., and Kim, Y.N.
OOncogenic role of rab escort protein 1 through EGFR and STAT3 pathway. Cell Death Dis. 8, e2621 (2017) [Pubmed]
Song, K.H., Woo, S.R., Chung, J.Y., Lee, H.J., Oh, S.J., Hong, S.O., Shim, J., Kim, Y.N., Rho, S.B., Hong, S.M., Cho, H., Hibi, M., Bae, D.J., Kim, S.Y., Kim, M.G., Kim, T.W., and Bae, Y.K.
REP1 inhibits FOXO3-mediated apoptosis to promote cancer cell survival. Cell Death Dis. 8, e2536 (2017) [Pubmed]
Chiba, A., Watanabe-Takano, H., Terai, K., Fukui, H., Miyazaki, T., Uemura, M., Hashimoto, H., Hibi, M., Fukuhara, S., and Mochizuki, N.
Biochemical characterization of the medaka (Oryzias latipes) orthologue for mammalian tissue-type transglutaminase (TG2). Development 144, 334-344 (2017) [Pubmed]
Takada Y, Watanabe Y, Okuya K, Tatsukawa H, Hashimoto H, Hitomi K.
Osteocrin, a peptide secreted from the heart and other tissues, contributes to cranial osteogenesis and chondrogenesis in zebrafish. Biosci Biotechnol Biochem. 81, 469-474 (2017) [Pubmed]
Takeuchi, M., Yamaguchi, S., Sakakibara, Y., Hayashi, T., Matsuda, K., Hara, Y., Tanegashima, C., Shimizu, T., Kuraku, S., and Hibi, M.
Gene expression profiling of granule cells and Purkinje cells in the zebrafish cerebellum. J. Comp. Neurol. 525, 1558-1585 (2017) [Pubmed]
2016
Scalise, K., Shimizu, T., Hibi, M., and Sawtell, NB.
Responses of cerebellar Purkinje cells during fictive optomotor behavior in larval zebrafish. J. Neurophysiol. 116, 2067-2080 (2016) [Pubmed]
Yokota, S., Matsuno, R., Kato, H., Hashimoto, H., Kinoshita, M., Yokoi, H., and Suzuki, T.
Establishment of oct4:egfp transgeni and oct4:egfp/ β-actin:DsRed double transgenic medaka lines. In Vitro Cell Dev. Biol. Anim. J. 52, 646-653 (2016) [Pubmed]
2015
Kim, J.D., Park, K.E., Ishida, J., Kako, K., Hamada, J., Kani, S., Takeuchi, M., Namiki, K., Fukui, H., Fukuhara, S., Hibi, M., Kobayashi, M., Kanaho, Y., Kasuya, Y., Mochizuki, N., and Fukamizu, A.
PRMT8 as a phospholipase regulates Purkinje cell dendritic arborization and motor coordination. Sci. Adv. 1, e1500615 (2015) [Pubmed]
Takeuchi, M., Yamaguchi, S., Yonemura, S., Kakiguchi, K., Sato, Y., Higashiyama, T, Shimizu, T., and Hibi, M.
Type IV Collagen Controls the Axogenesis of Cerebellar Granule Cells by Regulating Basement Membrane Integrity in Zebrafish. PLoS Genet. 11, e1005587 (2015) [Pubmed]
Takeuchi, M., Matsuda, K., Yamaguchi, S., Asakawa, K., Miyasaka, N., Lal, P. Yoshihara, Y., Koga, A., Kawakami, K., Shimizu, T., and Hibi, M.
Establishment of Gal4 transgenic zebrafish lines for analysis of development of cerebellar neural circuitry. Dev. Biol. 397, 1-17 (2015) [Pubmed]
Kikuta, A., Furukawa, E., Ogawa, R., Suganuma, N., Saitoh, M., Nishimaki, T., Katsumura, T., Oota, H., Kawamoto, T., Tatsukawa, H., Hashimoto, H., and Hitomi, K.
Biochemical Characterization of Medaka (Oryzias latipes) Transglutaminases, OlTGK1 and OlTGK2, as Orthologues of Human Keratinocyte-Type Transglutaminase. PLoS One 10, e0144194 (2015) [Pubmed]
2014
Kimura, T., Nagao, Y., Hashimoto, H., Yamamoto-Shiraishi, Y., Yamamoto, S., Yabe, T., Takada, S., Kinoshita, M., Kuroiwa, A., Naruse, K.
Leucophores are similar to xanthophores in their specification and differentiation processes in medaka. Proc. Natl. Acad. Sci. USA. 111, 7343-7348 (2014) [Pubmed]
Nagao, Y., Suzuki, T., Shimizu, A., Kimurata, T., Seki, R., Adachi, T., Inoue, C., Omae, Y., Kamei, Y., Hara, I., Taniguchi, Y., Naruse, K., Wakamatsu, Y., Kelsh, R.N. Hibi, M., and Hashimoto, H.
Sox5 functions as a fate switch in medaka pigment cell development. PLoS Genet. 10, e1004246 (2014) [Pubmed]
Kottler, V.A., Kochi, I., Klötenmeyer, M., Hashimoto, M., Weigel, D., and Dreyer, C.
Multiple pigment cell types contribute to the black, blue, and orange ornaments of male guppies (Poecilia reticulata). PLoS One 9, e85674 (2014) [Pubmed]
Bubenshchikova, E., Kaftanovskaya, E., Adachi, T., Hashimoto, H., Kinoshita, M., and Wakamatsu, Y.
A protocol for adult somatic cell nuclear transfer in medaka fish (Oryzias latipes) with a high rate of viable clone formation. Cell Reprogram 15, 520-530 (2014) [Pubmed]
2013
Kwon, H.B., Fukuhara, S., Asakawa, K., Ando, K., Kashiwada, T., Kawakami, K., Hibi, M., Kwon, Y.G., Kim, K.W., Alitalo, K., and Mochizuki, N.
The parallel growth of motoneuron axons with the dorsal aorta depends on Vegfc/Vegfr3 signaling in zebrafish. Development 140, 4081-4090 (2013) [Pubmed]
2012
Yanicostas, C., Barbieri, E., Hibi, M., Brice, A., Stevanin, G., and Soussi-Yaniscostas, N.
Requirement for zebrafish ataxin-7 in differentiation of photoreceptors and cerebellar neurons. PLoS One 7, e50705 (2012) [Pubmed]
Tran, L.D., Hino, H., Quach, H., Lim, S., Shindo, A., Mimori-Kiyosue, Y., Mione, M., Ueno, N., Winkler, C., Hibi, M., and Sampath, K.
Dynamic microtubules at the vegetal cortex predict the embryonic axis in zebrafish. Development 139, 3644-3652 (2012) [Pubmed]
Kuscha, V., Frazer, S.L., Dias, T.B., Hibi, M., Becker, T., and Becker, C.G.
Lesion-induced generation of interneuron cell types in specific dorsoventral domains in the spinal cord of adult zebrafish. J. Comp. Neurol. 520, 3604-3616 (2012) [Pubmed]
Moriyama, Y., Kawanishi, T., Nakamura, R., Tsukahara, T., Sumiyama, K., Suster, M.L., Kawakami, K., Toyada, A., Fujiyama, A., Yasuoka, Y., Nagao, Y. Sawatari, E., Shimizu, A., Wakamatsu, Y., Hibi, M., Taira, M., Okabe, M., Naruse, K., Hashimoto, H., Shimada, A., and Takeda, H.
The medaka zic1/zic4 mutant provides molecular insights into teleost caudal fin evolution. Curr. Biol. 22, 601-607 (2012) [Pubmed]
Suzuki, M., Otsuka, T., Ohsaki, Y., Cheng, J., Taniguchi, T., Hashimoto, H., Taniguchi, H., and Fujimoto, T.
Derlin-1 and UBXD8 are engated in dislocation and degradation of lipidated ApoB-100 at lipid droplets. Mol. Biol. Cell 23, 800-810 (2012) [Pubmed]
Imai, H., Oomiya, Y., Kikkawa, S., Shoji, W., Hibi, M., Terashima, T., and Katsuyama, Y.
Dynamic changes in the gene expression of zebrafish Reelin receptors during embryogenesis and htaching period. Dev. Growth Differ. 54, 253-263 (2012) [Pubmed]
2011
Uji, S., Kurokawa, T., Hashimoto, H., Kasuya, T,. and Suzuki, T.
Embryogenic staging of fugu, Takifugu rubripes, and expression profiles of aldh1a2, aldh1a3, and cyp26a1. Dev. Growth Differ. 53, 715-725 (2011) [Pubmed]
Hattori, M., Hashimoto, H., Bubenshichikova, E., and Wakamatsu, Y.
Nuclear transfer of embryonic cell nuclei to non-enucleated eggs in zebrafish, Danio rerio. Int. J. Biol. Sci. 7, 460-468 (2011) [Pubmed]
Matsuda, Y., Ito, Y., Hashimoto, H., Yokoi, H., and Suzuki T.
Detection of vitellogenin incorporation into zebrafish oocytes by FITC fluorescence. Reprod. Biol. Endocrinol. 9, 45 (2011) [Pubmed]
Takano, A., Zochi, R., Hibi, M., Terashima, T., and Katsuyama, Y.
Function of strawberry notch family genes in the zebrafish brain develoment. Kobe J. Med. Sci. 56, E220-E230 (2011) [Pubmed]
2010
Tanabe, K., Kani, S., Shimizu, T., Bae, Y.-K., Abe, T., and Hibi, M.
Atypical PKC regulates primary dendrite specification of cerebellar Purkinje cells by localizing Golgi apparatus. J. Neurosci. 30, 16983-16992 (2010) [Pubmed]
Nagao, Y., Cheng, J., Kamura, K., Seki, R., Maeda, A., Nihei, D., Koshida, S., Wakamatsu, Y., Fujimoto, T., Hibi, M., and Hashimoto, H.
Dynein axonemal intermediate chain 2 is required for formation of the left-right body axis and kidney in medaka. Dev. Biol.347, 53-61 (2010) [Pubmed]
Takano, A., Zochi, R., Hibi, M., Terashima, T., and Katsuyama, Y.
Expression of strawberry notch family genes during zebrafish embryogenesis. Dev.Dyn.239, 1789-1796 (2010) [Pubmed]
Shimizu, T., Nakazawa, M., Kani, S., Bae, Y.-K., Shimizu, T., Kageyama, R., Hibi, M.
Zinc finger genes Fezf1 and Fezf2 control neuronal differentiation by repressing Hes5 expression in forebrain. Development137, 1875-1885 (2010) [Pubmed]
Kani, S., Bae, Y.-K., Shimizu, T., Tanabe, K., Satou, C., Parsons, M.J. Scott, E., Higashijima, S.-I., and Hibi, M. Proneural gene-linked neurogenesis in zebrafish cerebellum. Dev. Biol.343, 1-17 (2010) [Pubmed]
Nojima, H., Rothhämel, S., Shimizu, T., Kim, C.H., Yonemura, S., Marlow, F.L., Hibi, M.
Syntabulin, a motor protein linker, controls dorsal determination. Development 137, 923-933 (2010) [Pubmed]
Sawatari, E., Seki, R., Adachi, T., Hashimoto, H., Uji, S., Wakamatsu, Y., Nakata, T., and Kinoshita, M.
Overexpression of the dominant-negative form of myostatin results in doubling of muscle-fiber number in transgenic medaka (Oryzias latipes). Comp. Biochem. Physiol. A Mol. Integr. Physiol.155, 183-189 (2010) [Pubmed]
2009
Bae, Y.-K., Kani, S., Shimizu, T., Tanabe, K., Nojima, H., Kimura, Y., Higashijima, S.-I., and Hibi, M.
Anatomy of zebrafish cerebellum and screen for mutations affecting its development. Dev. Biol.330, 406-426 (2009) [Pubmed]
Watanabe, N., Hiramatsu, K., Miyamoto, R., Yasuda, K., Suzuki, N., Oshima, N., Kiyonari, H., Shiba, D., Nishio, S., Mochizuki, T., Yokoyama, T., Maruyama, S., Matsuo, S., Wakamatsu, Y., and Hashimoto, H.
A murine model of neonatal diabetes mellitus in Glis3-deficient mice. FEBS Lett. 583, 2108-2113 (2009) [Pubmed]
Sawatari, E., Hashimoto, H., Matsumura, T., Iwata, Y., Yamamoto, N., Yokoyama, Y. and Wakamatsu, Y.
Cell growth-promoting activity of fluid from eye sacs of the bubble-eye goldfish (Carassius auratus). Zoolog. Sci.26, 254-8 (2009) [Pubmed]
Hashimoto, H., Miyamoto, R., Watanabe, N., Shiba, D., Ozato, K., Inoue, C., Kubo, Y., Koga, A., Jindo, T., Narita, T., Naruse, K. Ohishi, K., Nogata, K., Shin-I, T., Asakawa, S., Shimizu, N., Miyamoto, T., Mochizuki, T., Yokoyama, T., Hori, H., Takeda, H., Kohara, Y., and Wakamatsu, Y.
Polycystic kidney disease in the medaka (Oryzias latipes) pc mutant caused by a mutation in the Gli-similar3 (glis3) gene. PLoS ONE4, e6299 (2009). [Pubmed]
Watanabe, N., Kato, M., Suzuki, N., Inoue, C., Fedorova, S., Hashimoto, H., Maruyama, S., Matsuo, S. and Wakamatsu, Y.
Kidney regeneration through nephron neogenesis in medaka. Dev. Growth. Differ.51, 135-43 (2009) [Pubmed]
2008
Kim, H., Kim, S., Chung, A.Y., Bae, Y.K., Hibi, M., Lim, C.S., and Park, H.C.
Notch-regulated perineurium development from zebrafish spinal cord. Neurosci. Lett.448, 240-244 (2008) [Pubmed]
Asakawa, K., Suster, M. L., Mizusawa, K., Nagayoshi, S., Kotani, T., Urasaki, A., Kishimoto, Y., Hibi, M., and Kawakami, K.
Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafish. Proc. Natl. Acad. Sci. USA.105, 1255-1260 (2008) [Pubmed]
Bubenshchikova, E., Kaftanovskaya, E., Hattori, M., Kinoshita, M., Adachi, T., Hashimoto, H., Ozato, K. and Wakamatsu, Y.
Nuclear transplants from adult somatic cells generated by a novel method using diploidized eggs as recipients in medaka fish (Oryzias latipes). Cloning Stem Cells10, 443-52 (2008) [Pubmed]
Fedorova, S., Miyamoto, R., Harada, T., Isogai, S., Hashimoto, H., Ozato, K. and Wakamatsu, Y.
Renal glomerulogenesis in medaka fish, Oryzias latipes. Dev Dyn237, 2342-52 (2008) [Pubmed]
2007
Katsuyama, Y., Oomiya, Y., Dekimoto, H., Motooka, E., Takano, A., Kikkawa, S., Hibi, M., and Terashima, T.
Expression of zebrafish ROR alpha gene in cerebellar-like structures. Dev. Dyn.236, 2694-2701 (2007) [Pubmed]
Komuta, Y., Hibi, M., Arai, T., Nakamura, S., and Kawano, H.
Defects in reciprocal projects between the thalamus and cerebral cortex in the early development of Fezl-deficient mice. J. Comp. Neurol. 503, 454-465 (2007) [Pubmed]
Nikaido, M., Doi, K., Shimizu, T., Hibi, M., Kikuchi, Y., and Yamasu, K.
Initial specification of the epibranchial placode in zebrafish embryos depends on the fibroblast growth factor signal. Dev. Dyn.236, 564-571 (2007) [Pubmed]
Bubenshchikova, E., Kaftanovskaya, E., Motosugi, N., Fujimoto, T., Arai, K., Kinoshita, M., Hashimoto, H., Ozato, K. and Wakamatsu, Y.
Diploidized eggs reprogram adult somatic cell nuclei to pluripotency in nuclear transfer in medaka fish (Oryzias latipes). Dev Growth Differ49, 699-709 (2007) [Pubmed]
2006
Shimizu, T., Bae, Y.-K., and Hibi, M.
Cdx-Hox code controls competence for responding to Fgfs and retinoic acid in zebrafish neural tissue. Development133, 4709-4719 (2006) [Pubmed]
Hirata, T., Nakazawa, M., Muraoka, O., Nakayama, R., Suda, Y., and Hibi, M.
Zinc-finger genes Fez and Fez-like function in the establishment of diencephalon subdivisions. Development133, 3993-4004 (2006) [Pubmed]
Hirata, T., Nakazawa, M., Yoshihara, S., Miyachi, H., Kitamura, K., Yoshihara, Y., and Hibi, M.
Zinc-finger gene Fez in the olfactory neurons regulates development of the olfactory bulb non-cell-autonomously. Development133, 1433-1443 (2006) [Pubmed]
Muraoka, O., Shimizu, T., Yabe, T., Nojima, H., Bae, Y-K., Hashimoto, H., and Hibi, M.
Sizzled controls dorso-ventral polarity by repressing cleavage of the Chordin protein. Nat. Cell Biol.8, 329-340 (2006) [Pubmed]
2005
Molyneaux, B.J., Arlotta, P., Hirata, T., Hibi, M., and Macklis J.D. Fezl is required for the birth and specification of corticospinal motor neurons. Neuron47, 817-831 (2005) [Pubmed]
Shimizu, T., Yabe, T., Muraoka, O., Yonemura, S., Aramaki, S., Hatta, K., Bae, Y.-K., Nojima, H., and Hibi, M.
E-cadherin is required for gastrulation cell movements in zebrafish. Mech. Dev.122, 747-763 (2005) [Pubmed]
Bae, Y-K., Shimizu, T., and Hibi, M.
Patterning of proneuronal and inter-proneuronal domains by hairy- and enhancer of split-related genes in zebrafish neuroectoderm. Development132, 1375-1385 (2005) [Pubmed]
Shimizu, T., Bae, Y.-K., Muraoka, O., and Hibi, M.
Interaction of Wnt and caudal-related genes in zebrafish posterior body formation. Dev. Biol. 279, 125-141 (2005) [Pubmed]
Yamamoto, A., Nagano, T., Takehara, S., Hibi, M., and Aizawa, S.
Shisa promotes head formation through the inhibition of receptor maturation for the caudalizing factors, Wnt and FGF. Cell120, 223-235 (2005) [Pubmed]
Mochizuki, E., Fukuta, K., Tada, T., Harada, T., Watanabe, N., Matsuo, S., Hashimoto, H., Ozato, K. and Wakamatsu, Y.
Fish mesonephric model of polycystic kidney disease in medaka (Oryzias latipes) pc mutant. Kidney Int68, 23-34 (2005). [Pubmed]
2004
Hirata, T., Suda, Y., Nakao, K., Narimatsu, M., Hirano, T., and Hibi, M.
The zinc finger gene fez-like functions in the formation of subplate neurons and thalamocortical axons. Dev. Dyn.230, 546-556 (2004). [Pubmed]
Bae, Y.-K., Shimizu, T., Muraoka, O., Yabe, T., Hirata, T., Nojima, H., Hirano, T., and Hibi, M.
Expression of sax1/nkx1.2 and sax2/nkx1.1 in zebrafish. Gene Expr. Patterns 4, 481-486 (2004) [Pubmed]
Nojima, H., Shimizu, T., Kim, C.-H., Yabe, T., Bae, Y.-K., Muraoka, O., Hirata, T., Chitnis, A., Hirano, T., and Hibi, M.
Genetic evidence for involvement of maternally derived Wnt canonical pathway in dorsal determination in zebrafish. Mech. Dev.121, 371-386 (2004) [Pubmed]
Hashimoto, H., Rebagliati, M., Ahmad, N., Muraoka, O., Kurokawa, T., Hibi, M. and Suzuki, T.
The Cerberus/Dan-family protein Charon is a negative regulator of Nodal signaling during left-right patterning in zebrafish. Development131, 1741-1753 (2004) [Pubmed]
2003
Yabe, T., Shimizu, T., Muraoka, O., Bae, Y.-K., Hirata, T., Nojima, H., Kawakami, A., Hirano, T., and Hibi, M.
Ogon/Secreted Frizzled functions as a negative feedback regulator of BMP signaling. Development 130, 2705-2716 (2003). [Pubmed]
Bae, Y.-K., Shimizu, T., Yabe, T., Kim, C.-H., Hirata, T., Nojima, H., Muraoka, O., Hirano, T., and Hibi, M.
A homeobox gene, pnx, is involved in the formation of posterior neurons in zebrafish. Development130, 1853-1865 (2003). [Pubmed]
Levkowitz, G., Zeller, J., Sirotkin, H.I., French, D., Schilbach, S., Hashimoto, H., Hibi, M., Talbot, W.S., and Rosenthal, A.
Zinc finger protein too few controls the development of monoaminergic neurons. Nat. Neurosci.6, 28-33 (2003) [Pubmed]
2002
Shimizu, T., Yamanaka, Y., Nojima, H., Yabe, T., Hibi, M., and Hirano, T.
A novel repressor-type homeobox gene, ved, is involved in dharma/bozozok-mediated dorsal organizer formation in zebrafish. Mech. Dev.118, 125-138 (2002) [Pubmed]