• Original papers（2002-）
• Reviews（2002-）
• Publication list of Masahiko Hibi
• Publication list of Takashi Shimizu
• Publication list of Hisashi Hashimoto

Publications : Takashi Shimizu

Original papers

• Matsuda, K., Yoshida, M., Kawakami, K., Hibi, M. and Shimizu, T.
  Granule cells control recovery from classical conditioned fear responses in the zebrafish cerebellum.
  Sci Rep 7, 11865 (2017)
• Takeuchi, M., Inoue, C., Goshima, A., Nagao, Y., Shimizu, K., Miyamoto, H., Shimizu, T., Hashimoto, H., Yonemura, S., Kawahara, A., Hirata, Y., Yoshida, M., and Hibi, M.
  Medaka and zebrafish contactin1 mutants as a model for understanding neural circuits for motor coordination.
  Genes Cells 22, 723-741 (2017)
• Takeuchi, M., Yamaguchi, S., Sakakibara, Y., Hayashi, T., Matsuda, K., Hara, Y., Tanegashima, C., Shimizu, T., Kuraku, S., and Hibi, M.
  Gene expression profiling of granule cells and Purkinje cells in the zebrafish cerebellum.
  J. Comp. Neurol. 525, 1558-1585 (2017)
  
• Scalise, K., Shimizu, T., Hibi, M., and Sawtell, NB.
  Responses of cerebellar Purkinje cells during fictive optomotor behavior in larval zebrafish.
  J. Neurophysiol. 116, 2067-2080 (2016)
  
• Takeuchi, M., Yamaguchi, S., Yonemura, S., Kakiguchi, K., Sato, Y., Higashiyama, T, Shimizu, T., and Hibi, M.
  Type IV Collagen Controls the Axogenesis of Cerebellar Granule Cells by Regulating Basement Membrane Integrity in Zebrafish.
  PLoS Genet. 11, e1005587 (2015)
• Takeuchi, M., Matsuda, K., Yamaguchi, S., Asakawa, K., Miyasaka, N., Lal, P. Yoshihara, Y., Koga, A., Kawakami, K., Shimizu, T., and Hibi, M.
  Establishment of Gal4 transgenic zebrafish lines for analysis of development of cerebellar neural circuitry.
  Dev. Biol. 397, 1-17 (2015)
  
• Tanabe, K., Kani, S., Shimizu, T., Bae, Y.-K., Abe, T., and Hibi, M.
  Atypical PKC regulates primary dendrite specification of cerebellar Purkinje cells by localizing Golgi apparatus.
  J. Neurosci. 30, 16983-16992 (2010)
• Kani, S., Bae, Y.-K., Shimizu, T., Tanabe, K., Satou, C., Parsons, P.J., Scott, E., Higashijima, S., and Hibi, M.
  Proneural gene-linked neurogenesis in zebrafish cerebellum.
  Dev. Biol. 343, 1-17 (2010)
• Shimizu, T., Nakazawa, M., Kani, S., Bae, Y.-K., Shimizu, T., Kageyama, R., and Hibi, M.
  Zinc finger genes Fezf1 and Fezf2 control neuronal differentiation by repressing Hes5 expression in the forebrain.
  Development 137, 1875-85 (2010)
• Nojima, H., Rothhämel, S., Shimizu, T., Kim, C.-H., Yonemura, S., Marlow, F,-L., and Hibi, M.
  Syntabulin, a motor protein linker, controls dorsal determination.
  Development 137, 923-933 (2010)
• Bae, Y.-K., Kani, S., Shimizu, T., Tanabe, K., Nojima, H., Kimura, Y., Higashijima, S., and Hibi, M.
  Anatomy of zebrafish cerebellum and screen for mutations affecting its development.
  Dev. Biol. 336, 406-426 (2009)
• Nikaido, M., Doi, K., Shimizu, T., Hibi, M., Kikuchi, Y., and Yamasu, Y.
  Initial specification of the epibranchial placode in zebrafish embryos depends on the fibroblast growth factor signal.
  Dev Dyn. 236, 564-571 (2007)
• Shimizu, T., Bae, Y.-K., and Hibi, M.
  Cdx-Hox code controls competence for responding to Fgfs and retinoic acid in zebrafish neural tissue.
  Development 133, 4709-4719 (2006)
• Muraoka, O., Shimizu, T., Yabe, T., Nojima, H., Bae, Y.-K., Hashimoto, H., and Hibi, M.
  Sizzled controls dorso-ventral polarity by repressing cleavage of the Chordin protein.
  Nat. Cell Biol.8, 329-338 (2006)
• Shimizu , T., Yabe, T., Muraoka, O., Yonemura S., Aramaki, S., Hatta, K., Bae, Y.-K., Nojima, H., and Hibi, M.
  E-cadherin is required for gastrulation movements in zebrafish.
  Mech. Dev. 122, 747-763 (2005)
• Bae, Y.-K., Shimizu , T., and Hibi, M.
  Patterning of proneuronal and inter-proneuronal domains by hairy- and enhancer of split-related genes in zebrafish neuroectoderm.
  Development132, 1375-1385 (2005)
• Shimizu, T., Bae, Y.-K., Muraoka, O., and Hibi, M.
  Interaction of Wnt and caudal-related genes in zebrafish posterior body formation.
  Dev. Biol. 279, 125-141 (2005)
• Nojima, H., Shimizu, T., Kim, C.-H., Yabe, T., Bae, Y.-K., Muraoka, O., Hirata, T., Hirano, T., and Hibi, M.
  Genetic evidence for involvement of maternally derived Wnt cannonical signaling in dorsal determination in zebrafish.
  Mech. Dev. 121, 371-386 (2004)
• Bae, Y.-K., Shimizu, T., Muraoka, O., Yabe, T., Hirata, T., Nojima, H., Hirano, T., and Hibi, M.
  Expression of sax1/nkx1.2 and sax2/nkx1.1 in zebrafish.
  Gene Expr. Patterns4, 481-186 (2004)
• Yabe, T., Shimizu T., Muraoka, O., Bae, Y.-K., Hirata, T., Nojima, H., Kawakami, A., Hirano, T., and Hibi, M.
  Ogon/Secreted Frizzled functions as a negative feedback regulator of Bmp signaling.
  Development 130, 2705-2716 (2003)
• Bae, Y.-K., Shimizu, T., Yabe, T., Kim, C.-H., Hirata, T., Nojima, H., Muraoka, O., Hirano, T., and Hibi, M.
  A homeobox gene, pnx is involved in the formation of posterior neurons in zebrafish.
  Development 130, 1853-1865 (2003)
• Shimizu, T., Yamanaka, Y., Nojima, H., Yabe, Y., Hibi, M., and Hirano,T.
  A novel repressor-type homeobox gene, ved, is involved in dharma/bozozok- mediated dorsal organizer formation in zebrafish.
  Mech. Dev. 118, 125-138 (2002)
• Yamashita, S., Miyagi, C., Carmany-Rampey, A., Shimizu, T., Fujii, R, Schier, A.-F., and Hirano, T.
  Stat3 controls cell movements during zebrafish gastrulation.
  Dev. Cell 2, 363-375 (2002)
• Sasaki, M.-S., Ejima, Y., Tachibana, A., Yamada, T., Ishizaki, K., Shimizu, T., and Nomura, T.
  DNA damage response pathway in radioadaptive response.
  Mutat Res. 504, 101-118 (2002)
• Ryu, S.-L., Fujii, R., Yamanaka, Y., Shimizu, T., Yabe, T., Hirata, T., Hibi, M., and Hirano, T.
  Regulation of dharma/bozozok by the Wnt pathway.
  Dev. Biol. 231, 397-409 (2001)
• Hashimoto, H., Yabe, T., Hirata, T., Shimizu, T., Bae, Y.-K., Yamanaka, Y., Hirano, T., and Hibi, M.
  Expression of the zinc finger fez-like in zebrafish forebrain.
  Mech. Dev. 97, 191-95 (2000)
• Hirata, T., Yamanaka, Y., Ryu, S.-L., Shimizu, T., Yabe, T., Hibi, M., and Hirano, T.
  Novel mix-family homeobox genes in zebrafish and their differential regulation.
  Biochem Biophys Res Commun. 271, 603-9 (2000)
• Shimizu, T., Yamanaka, Y., Ryu, S.-L., Hashimoto, H., Yabe, T., Hirata, T., Bae,Y.-K., Hibi, M., and Hirano, T.
  Cooperative roles of Bozozok/Dharma and Nodal-related proteins in the formation of the dorsal organizer in zebrafish.
  Mech Dev. 91, 293-303 (2000)
• Yamada, T., Tachibana, A., Shimizu, T., Mugishima, H., Okubo, M., and Sasaki, M.-S.
  Novel mutations of the FANCG gene causing alternative splicing in Japanese Fanconi anemia.
  J Hum Genet. 45, 159-66 (2000)
• Hashimoto, H., Itoh, M., Yamanaka, Y., Yamashita, S., Shimizu, T., Solnica-Krezel, L., Hibi, M., and Hirano, T.
  Zebrafish Dkk1 functions in forebrain specification and axial mesendoderm formation.
  Dev Biol. 217, 138-52 (2000)
• Shimizu, T., Kato, T. Jr., Tachibana, A., and Sasaki, M.-S.
  Coordinated regulation of radioadaptive response by protein kinase C and p38 mitogen-activated protein kinase.
  Exp Cell Res. 251, 424-32 (1999)
• Tachibana, A., Kato, T., Ejima, Y., Yamada, T., Shimizu, T., Yang, L., Tsunematsu, Y., and Sasaki, M.-S,
  Mutation and sequence variability of the FANCA gene in japanese Fanconi amemia.
  Hum. Mut. 37, 237-244 (1999)
• Kim, C.-H., Bae, Y.-K., Yamanaka, Y., Yamashita, S., Shimizu, T., Fuji, R., Park, H.-C., Yeo, S.-Y., Huh, T.-L., Hibi, M., and Hirano, T.
  Overexpression of neurogenin induces extopic expression of HuC in zebrafish.
  Neurosci. Lett, 239, 113-116 (1997)
• Akao, T., Kakehi, Y., Itoh, N., Ozdemir, E., Shimizu, T., Tachibana, A., Sasaki, M.-S., and Yoshida, O.
  A high prevalence of functional inactivation by methylation modification of p16INK4A/CDKN2/MTS1 gene in primary urothelial cancers.
  Jpn J Cancer Res. 88, 1078-86 (1997)
• Kato, M.-V., Shimizu, T., Nagayoshi, M., Kaneko, A., Sasaki, M.-S., and Ikawa, Y.
  Genomic imprinting of the human serotonin-receptor (HTR2) gene involved in development of retinoblastoma.
  Am J Hum Genet. 59, 1084-90 (1996)
• Kato, M.-V., Shimizu, T., Ishizaki, K., Kaneko, A., Yandell, D.-W., Toguchida, J., and Sasaki, M.-S.
  Loss of heterozygosity on chromosome 17 and mutation of the p53 gene in retinoblastoma.
  Cancer Lett. 106, 75-82 (1996)
• Kato, M.-V., Ishizaki, K., Shimizu, T., Toguchida, J., Kaneko, A., and Sasaki, M.-S.
  Delayed development of retinoblastoma associated with loss of a maternal allele on chromosome 13.
  Int J Cancer 64, 3-8 (1995)
• Kato, M.-V., Ishizaki, K., Shimizu, T., Ejima, Y., Tanooka, H., Takayama, J., Kaneko, A., Toguchida, J., and Sasaki, M.-S.
  Parental origin of germ-line and somatic mutations in the retinoblastoma gene.
  Hum Genet. 94, 31-8 (1994)
• Wadayama, B., Toguchida, J., Shimizu, T., Ishizaki, K., Sasaki, M.-S., Kotoura, Y., and Yamamuro, T.
  Mutation spectrum of the retinoblastoma gene in osteosarcomas.
  Cancer Res. 54, 3042-8 (1994)
• Shimizu, T., Toguchida, J., Kato, M.-V., Kaneko, A., Ishizaki, K., and Sasaki, M.-S.
  Detection of mutations of the RB1 gene in retinoblastoma patients by using exon-by-exon PCR-SSCP analysis.
  Am J Hum Genet. 54, 793-800 (1994)
• Kato, M.-V., Ishizaki, K., Toguchida, J., Kaneko, A., Takayama, J., Tanooka, H., Kato, T., Shimizu, T., and Sasaki, M.-S.
  Mutations in the retinoblastoma gene and their expression in somatic and tumor cells of patients with hereditary retinoblastoma.
  Hum Mutat. 3, 44-51 (1994)

Reviews

• Hibi, M., Matsuda, K., Takeuchi, M., Shimizu, T., and Murakami, Y.
  Evolutionary mechanisms that generate morphology and neural-circuit diversity of the cerebellum.
  Dev. Growth Differ. 59, 228-243 (2017)
• Hibi, M. and Shimizu, T.
  Deciphering Cerebellar Neural Circuitry Involved in Higher Order Functions Using the Zebrafish Model.
  in: Kondoh, H. and Kuroiwa, A. (Eds.), New Principles in Developmental ProcessesSpringer, pp. 161-184 (2014)
• Hibi, M. and Shimizu, T.
  Development of the cerebellum and cerebellar neural circuits.
  Dev. Neurobiol.72, 282-301 (2012)